Temporal and Multiplex PageRank for Gene Regulatory Network Analysis


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Documentation for package ‘pageRank’ version 1.16.0

Help Pages

accessibility_network Build Network from Accessibility Peaks.
adjust_graph Re-calculate PageRank
aracne_network Re-format ARACNe Network.
bubble_plot Make Bubbleplot
clean_graph Clean Graph
conformation_network Build Network from Conformation Peaks.
diff_graph Calculate Temporal PageRank from Two Graphs
get_color_gradient Generate Color Gradient
multiplex_page_rank Calculate Multiplex PageRank
P_graph Build Probability-Based Network
P_null Build Null Distribution of Probability-Based Distance
time_expmat Generate Timewise Average Gene Expression