assays-method | RegspliceData objects. |
colData-method | RegspliceData objects. |
countsData | RegspliceData objects. |
countsData-method | RegspliceData objects. |
createDesignMatrix | Create design matrix. |
df_tests | RegspliceResults objects. |
df_tests-method | RegspliceResults objects. |
filterLowCounts | Filter low-count exons. |
filterZeros | Filter zero-count exons. |
fitFullMultiple | Fit models. |
fitNullMultiple | Fit models. |
fitRegMultiple | Fit models. |
gene_IDs | RegspliceResults objects. |
gene_IDs-method | RegspliceResults objects. |
initializeResults | Initialize RegspliceResults object. |
LRTests | Calculate likelihood ratio tests. |
LR_stats | RegspliceResults objects. |
LR_stats-method | RegspliceResults objects. |
p_adj | RegspliceResults objects. |
p_adj-method | RegspliceResults objects. |
p_vals | RegspliceResults objects. |
p_vals-method | RegspliceResults objects. |
regsplice | Wrapper function to run regsplice. |
RegspliceData | RegspliceData objects. |
RegspliceData-class | RegspliceData objects. |
RegspliceResults | RegspliceResults objects. |
RegspliceResults-class | RegspliceResults objects. |
rowData-method | RegspliceData objects. |
runNormalization | Calculate normalization factors. |
runVoom | Calculate 'voom' transformation and weights. |
summaryTable | Summary table. |
weightsData | RegspliceData objects. |
weightsData-method | RegspliceData objects. |
[-method | RegspliceData objects. |