All functions
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adapter_filter()
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Remove full and partial adapters from a ShortReadQ object |
check_encoding()
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Check quality encoding |
complex_filter()
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Remove sequences with low complexity |
fixed_filter()
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Remove a fixed number of bases of a ShortReadQ object from 3' or 5' |
inject_letter_random()
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Inject a letter in a set of sequences at random positions |
launch_fqc()
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Launch FastqCleaner application |
length_filter()
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Filter sequences of a FASTQ file by length |
n_filter()
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Remove sequences with non-identified bases (Ns) from a ShortReadQ object |
qmean_filter()
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Filter sequences by their average quality |
random_length()
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Create a named object with random sequences and qualities |
random_qual()
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Create random qualities for a given encoding |
random_seq()
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Create random sequences |
seq_filter()
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Remove a set of sequences |
seq_names()
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Create sequences names |
trim3q_filter()
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Filter sequences with low quality in 3' tails |
unique_filter()
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Remove duplicated sequences in a FASTQ file |