clr |
Detected ASV from multiple individuals at four different sampling times. |
iterativeClustering |
Stability of individuals after iteratively performing Hartigan-Wong k-means clustering. |
iterativeClusteringCV |
Cross validation of the iterative Hartigan-Wong k-means clustering. |
mSerrorCV |
Compute the mean absolute error (MAE) in percentage after 'iterativeClusteringCV()'. |
mSinternalPairedTimes |
Internal function for 'pairedTimes()'. |
mSmetadataGroups |
Easily extract groups of individuals from sample metadata. |
mSpreviz |
Process the 'iterativeClustering()' output to a new format ready for the implemented visualization functions. |
pairedTimes |
Generate one or multiple matrices with paired times. |
pairedTimes-method |
Generate one or multiple matrices with paired times. |
plotmSdynamics |
Generate boxplots of the stability dynamics throughout sampling times by groups. |
plotmSheatmap |
Plot a heatmap of the stability results. |
plotmSlinesCV |
Plot the stability values after 'iterativeClusteringCV()'. |
plotmSscatter |
Plot a scatter and side boxplot of the stability results. |